OUR PARTS COLLECTION AS A TOOLKIT FOR GENETIC ENGINEERING OF M. EXTORQUENS
In synthetic biology it is of great importance to have well characterized genetic elements. For model organisms, these genetic elements are usually well characterized, however for non-model organisms, like M. extorquens, this toolkit is lacking1, 2. The ability to regulate gene expression provides many options for genetic engineering, therefore, we decided to build a parts collection testing constitutive and inducible promoters. As a backbone, a oriV-traJ’ origin with TcR was used (pTE100, which was a gift from Dr. Schada Von Borzyskowski (Addgene plasmid # 59395))1. The promoter strength was assessed using an mCherry testing cassette. We included the constitutively active promoters PmxaF, PfumC, PcoxB and Ptuf, which were previously characterized in M. extorquens by Schada Von Borzyskowski et al. (2015)1. We included the IPTG inducible promoters PL/O4/A1, which were previously published by Carrillo et al. (2019)2. Additionally, we included an inducible promoter that was not yet characterized for M. extorquens specifically. In 2014, Kaczmarczyk et al. published a vanillate inducible promoter, PV10 for expression in Sphingomonas3.
Table 1: Overview of the constitutive promoters in the parts collection
Name | Part | Promoter strength |
---|---|---|
PfumC | BBa_K4721000 | Low |
PcoxB | BBa_K4721001 | Low |
PmxaF | BBa_K4721002 | High |
Ptuf | BBa_K4721003 | Medium |
Table 2: Overview of the composite inducible promoters in the parts collection
Name Composite Part | Composite Part | Name Basic Parts | Basic Part | Basic Part Features |
---|---|---|---|---|
PL/O4/A1 IPTG inducible system | BBa_K4721006 | PL/O4/A1 | BBa_K4721004 | Promoter, Operator |
lacIq promoter | BBa_K4721005 | Promoter | ||
lacIq repressor gene | BBa_K1222003 | Coding | ||
lacIq terminator | BBa_K4721007 | Terminator | ||
PV10 vanillate inducible system | BBa_K4721008 | VanR repressor gene | BBa_K4721009 | Coding |
RBS to combine with Pbla-mut1T | BBa_K4721013 | RBS | ||
Pbla-mut1T | BBa_K4721012 | Promoter | ||
PV10 | BBa_K4721011 | RBS, Operator | ||
RBS to combine with PV10 | BBa_K4721010 | RBS |