Our team is nominated for Best New Composite Part. See Awards.
In (BBa_K4630001-BBa_K4630120), we designed a series of basic and composite parts to fulfill the recording event, using the concept of self-targeting editing and self-recombination.
- To construct composite parts, we added three stgRNA sequences generated by our drylab as basic parts (BBa_K4630001-BBa_K4630003), and some components we need (BBa_K4630004, BBa_K4630005). Then, two sets of designs were created: one with each cassette assigned a unique barcode to ensure accurate recombination (BBa_K4630100-BBa_K4630103), and another without the need for barcode accumulation (BBa_K4630110-BBa_K4630115), resulting in a more compacted and extendable device. Moreover, we employed EGFP as the reporter of successful recording and developed a series of parts (BBa_K4630116-BBa_K4630120).
(BBa_K4630200-BBa_K4630202) involve the three plasmids we used to express Cas9 and Lambda-Red. They are in line with the progress of optimization.
(BBa_K4630300-BBa_K4630301) are the two optimized new parts of the EL222 system developed by directed evolution.
(BBa_K4630400- BBa_K4630403) are the parts we designed to perform sgRNA screening. As these parts are directly synthesized or Gibson cloned, they are assembly incompatible up to now.
New Parts
- Name
- BBa_K4630001
- BBa_K4630002
- BBa_K4630003
- BBa_K4630004
- BBa_K4630005
- BBa_K4630006
- BBa_K4630100
- BBa_K4630101
- BBa_K4630102
- BBa_K4630103
- BBa_K4630110
- BBa_K4630111
- BBa_K4630112
- BBa_K4630113
- BBa_K4630114
- BBa_K4630115
- BBa_K4630116
- BBa_K4630117
- BBa_K4630118
- BBa_K4630119
- BBa_K4630120
- BBa_K4630200
- BBa_K4630201
- BBa_K4630202
- BBa_K4630300
- BBa_K4630301
- BBa_K4630400
- BBa_K4630401
- BBa_K4630402
- BBa_K4630403
- Description
- self-targeting guide RNA 1
- self-targeting guide RNA 2
- self-targeting guide RNA 3
- double terminator
- Lac promoter + operator
- Cas9
- stgRNA-barcode-cassette 1
- stgRNA-barcode-cassette 2
- stgRNA-barcode-cassette (1+2)
- stgRNA-barcode-cassette (0+2)
- stgRNA-cassette 1
- stgRNA-cassette 2
- stgRNA-cassette 3
- stgRNA-cassette (1+2)
- stgRNA-cassette (1+2+3)
- pCDF-Duet1-T7-stgRNA-cassette (1+2+3)
- XbaI-stgRNA-1-SpeI-BamHI-selfRecombination
- XbaI-stgframe-SpeI-BamHI-selfRecombination
- pET28a-eGFP-stgRNA1
- pET28a-eGFP-stgframe
- pET28a-eGFP-stgRNA1-stgframe
- pCas
- pCasop
- pCasop-stgRNA(1+2+3)
- EL Binding Site(pEL)
- Blue light activated inducible system with RFP reporter
- LacZ inserted with 50*( N20+PAM)
- EGFP inserted with 50*( N20+PAM)
- N20 screening-LacZ
- N20 screening-EGFP
- Type
- Basic
- Basic
- Basic
- Composite
- Composite
- Basic
- Composite
- Composite
- Composite
- Composite
- Composite
- Composite
- Composite
- Composite
- Composite
- Plasmid
- Composite
- Composite
- Plasmid
- Plasmid
- Plasmid
- Plasmid
- Plasmid
- Plasmid
- Basic
- Composite
- Measurement
- Measurement
- Composite
- Composite
- Main function
- Basic bricks
- Basic bricks
- Basic bricks
- Basic bricks
- Basic bricks
- Basic bricks
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- pCasop
- pCasop
- pCasop
- EL222
- EL222
- N20 screening
- N20 screening
- N20 screening
- N20 screening
Used Parts
- Description
- EGFP
- Lambda-Red
- Cas9
- Standardized Cas9 coding sequence + B0015 terminator
- araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
- pBAD promoter
- Lac operator/pSB1C3
- E. coli lac promoter
- LacI - Coding for lac repressor
- Blue light activated inducible system with RFP reporter
- pEl222
- EL222 protein
- El222 binding(C120)
- RFP Coding Device
- SBFP2: strongly enhanced blue fluorescent protein
- The thiosulfate sensing system under the control of J23103
- lasR activator
- Pluxr
- Biosensor device for erythromycin detection
- pPcau
- Type
- Coding
- Coding
- Coding
- Composite
- Promoter
- Promoer
- Operator
- Promoter
- Coding
- Composite
- Promoter
- Coding
- Regulatory
- Reporter
- Coding
- Composite
- Coding
- Promoter
- Composite
- Promoter
- Main function
- All
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- Recording
- EL222
- EL222
- EL222
- EL222
- EL222
- EL222
- IBD Diagnosis
- PA Infection Diagnosis
- PA Infection Diagnosis
- Macrolides Detection
- PCA Monitoring