PI | Advisor | Wet Lab | Dry Lab | Human Practice | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Wenwen Huang | Kexin Nie | Jingyi Tian | HUONG THAO DOAN | Yilan Cui | Ximeng Zheng | Shihan Xiong | Jingyi Zuo | Weilun Du | Minjie Kuang | Min Yuan | Yidan Xu | Ruijie Ding | Yifan Deng | Xinlu Zhu | Yu Bai | Yitian Xiao | Yao Sun | Mingyuan Wang | Yiyang Zhang | Haiyun Kong | Xiang Yao | Di Wu | Kexuan Kong | |
Analysis | ● | ● | ● | ● | ||||||||||||||||||||
Conceptualization | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | |||||||
Background Research | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | |||||||||
Investigation | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | |||||
Notebook/record keeping | ● | ● | ● | |||||||||||||||||||||
Project Administration | ● | ● | ● | ● | ● | ● | ● | |||||||||||||||||
Fundraising | ● | |||||||||||||||||||||||
Public Engagement | ● | ● | ● | ● | ||||||||||||||||||||
Hardware | ● | ● | ||||||||||||||||||||||
Wiki Coding | ● | ● | ||||||||||||||||||||||
Visualization | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ||||||||||
Writing | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | ● | |||||||
Safety | ● | ● | ● | ● | ● | |||||||||||||||||||
Other | ● | ● | ● | ● | ● |
iGEM Competition 2023: Attribution Form | |||
Team: 2023 iZJU-China    |
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Team Member Contributions | |||
Name | Role | Tasks | Specific Tasks |
---|---|---|---|
Wenwen Huang | PI |
Conceptualization, Investigation, Other |
She provided help for team members to brainstorm and gave useful suggestions; She provided general advice on the experiments when we faced setbacks; She interacted with professors in related fields to provide experimental support to team members. |
Jingyi Tian | Advisor |
Safety, Other |
She kept the lab regulations informed by all student members; she ordered and supplyed reagent consumables needed. |
Kexin Nie | Advisor |
Conceptualization, Investigation, Other |
She helped student members come up with the initial idea for the project, provided suggestions on troubleshooting; she trained student members in experimental skills and guided them to conduct experiments properly; she supervised all the work that the iGEM team had done and ensured that they operate in accordance with test specifications and obey the laboratory safety rules. |
HUONG THAO DOAN | Advisor |
Analysis; Investigation |
She analyzed data generated by the turpentine user survey; she made the turpentine user survey. |
Yilan Cui | Advisor |
Visualization |
She was responsible for the promotion video production. |
Ximeng Zheng | Student Leader |
Conceptualization, Background Research, Investigation, Project Administration, Visualization, Writing, Fundraising |
she participated in brainstorming and developing initial ideas for the project; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she performed the plasmid transformation, test of biphase reaction system; she managed and coordinated the whole project; she prepared the promotion and presentation videos; she wrote the content of "engineering" part for wiki, reviewed and editedg content for the wiki; she raised funds and in-kind donations from our university to support the project. |
Shihan Xiong | Student Leader | Conceptualization, Background Research, Investigation, Project Administration, Visualization, Writing, Safety, Other |
She participated in brainstorming and developing initial ideas for the project, also brainstorming team name and slogan; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she performed experiments including protein purification and SDS-PAGE; she managed and coordinated the whole project as well as planning and executing the safety experiments; she prepared the presentation video; she wrote the contents of "safety" section for wiki, Biosafety Handbook and safety form, as well as reviewed and edited other content for Wiki; she reviewed the safety guidelines of the institution and government, organized team members to review laboratory safety and managed experiments related to project safety; she chose and ordered reagent consumables needed. |
Yifan Deng | Student Leader | Conceptualization, Investigation, Visualization, Writing, Project Administration, Background Research |
He participated in brainstorming and developing initial ideas for the project, also brainstorming of the modeling and wiki project; he used Simbiology to establish alpha-pinene oxide degradation part of the reaction model and modify the parameters; he used Simbiology to visualize the reaction process and participated in preparation for promotion video; he wrote the content of "modeling" part for wiki; he managed and coordinated the dry lab and participated in decision making on some major team issues; he read scientific articles related to alpha-pinene oxide degradation and model construction. |
Yiyang Zhang | Student Leader | Conceptualization, Background Research, Project Administration, Public Engagement, Visualization, Writing, Investigation |
She participated in brainstorming and developing initial ideas and product design for the project; she learned the Wiki of previous iGEM teams to get insight into how the Human Practice work was conducted; she read the iGEM handbook and sort out the requirements of the iGEM competition; she searched some initial literature to help with developing initial ideas; she managed and coordinated the whole human practice part of the project, including activities, planning, and execution; she collaborated and communicated with volunteer teaching teams, 0799 Art District, and different stakeholders to engage the broader community; she prepared the promotion and presentation videos; she wrote some parts of Human Practice and Team for wiki, reviewed and editedg content for the human practice part of wiki; she collected the turpentine user survey, the offline questionnaire and the online survey. |
Jingyi Zuo | Student Leader | Conceptualization, Background Research, Investigation, Notebook/record keeping, Project Administration, Hardware, Visualization, Writing | She particapted in brainstorming and developing ideas for the project, including the original inspiration for the project and three initial proposals; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she performed experiments including the plasmid transformation, protein purification, SDS-page, plasmid extraction, test of biphase reaction system, and primer design; she maintained the laboratory notebook and kept a record of partial laboratory activities; she managed and coordinated the project activities of initial plan; she designed our product and its mechanical composition; she prepared the promotion and presentation videos; she wrote, revied and edited content for the Wiki, including experimental protocol and minutes of meeting. |
Weilun Du | Student Leader | Analysis, Conceptualization, Background Research, Investigation, Project Administration, Notebook/record keeping, Writing | She participated in data analysis for the qualitative analysis report plot and TIC plot of the GC-MS test; she collected the literature, participated in the brainstorming of the whole project and specific experimental process, also participated in the troubleshooting and scheme optimization; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she performed experiments including bacteria transformation, protein purification and construction of biphase reaction system; she managed and coordinated the wet lab and participated in decision making on some major team issues; she recorded the experimental progress and results in stages, reported experimental progress to our PI; she wrote the experimental protocols presented on the Wiki, collected data and wrote the outline for parts. |
Minjie Kuang | Student | Analysis, Conceptualization, Background Research, Investigation, Notebook/record keeping, Writing |
She participated in data analysis for the qualitative analysis report plot and TIC plot of the GC-MS test; she participated in brainstorming before the initiation of experiments to determine the protocol and whole process, also developed ideas for experiment improvement; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she performed experiments including bacteria transformation, protein purification, SDS-PAGE with Coomassie Brilliant Blue staining for protein validation, construction of biphase reaction system; she maintained the laboratory notebook, and kepy a record of all laboratory activities with simple analysis and troubleshooting; she integrated all data obtained in the wet lab, and wrote words for wiki "lab notebook" and "parts" section. |
Yao Sun | Student | Wiki Coding, Visualization, Project Administration |
She is one of the main programmers for the team wiki, mainly taking charge of the homepage and all the content pages; she designed some parts of the wiki; she managed and coordinated the wiki group. |
Xinlu Zhu | Student | Conceptualization, Investigation, Visualization, Writing |
She participated in the brainstorming of the modeling project; she used Simbiology to establish the reaction model and modify the parameters; she used Simbiology to visualize the reaction process; she wrote the content of "model" part for wiki. |
Xiang Yao | Student | Conceptualization, Background Research, Public Engagement, Investigation, Visualization, Writing |
She helped with coming up with the initial ideas for the project; she read several peer-reviewed scientific research articles for thorough background research; she learned the Wiki of previous iGEM teams to get insight into how the Human Practice work was conducted; she searched some initial literature to help with developing initial ideas; she conducted interviews with some oil painting artists, she visited some oil paint stores to conduct the market survey; she collected the offline questionnaire; she participated in video production, preparing the video scripts; she wrote, reviewed, and edited content for the Wiki, she wrote content for WeChat tweets and Instagram. |
Min Yuan | Student | Investigation, Background Research, Handware, Visualization, Writing |
She performed experiments including bacteria transformation and SDS-PAGE for protein validation, and performed Gibson assembly including PCR test, DNA gel running and bacteria transformation; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she used computational method to create a draft version of our model; she prepared the promotion video; she wrote words for wiki "design" section and produced flowchart through BioRender, integrated words for wiki "results" section. |
Kexuan Kong | Student | Conceptualization, Background Research, Visualization, Investigation |
She participated in brainstorming and developing ideas for the project; she learned the Wiki of previous iGEM teams to get insight into how the Human Practice work was conducted; she was responsible for the art design of the wiki web pages and produced animations for the video; she collected the offline questionnaire. |
Yidan Xu | Student | Conceptualization, Background Research, Investigation, Writing, Safety |
She participated in the brainstorming of the whole project; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she performed preliminary experiments and Gibson assembly; she wrote the content of "implementation" part for wiki and Biosafety Handbook; she checked the Safety Form and reviewed the safety guidelines of the institution. |
Haiyun Kong | Student | Analysis, Conceptualization, Background Research, Public engagement, Writing, Safety, Visualization, Investigation | She analyzed the data of surveys in human practice; she helped us come up with the initial idea for the project; she learned the Wiki of previous iGEM teams to get insight into how the Human Practice work was conducted; she cooperated with volunteer teaching teams and collected questionnaires from the public; she wrote some parts in the human practice column in the wiki; she worked with wet lab members to discuss which safety problems need to be considered; she was in charge of video production, collecting materials needed for video; she collected the turpentine user survey, the offline questionnaire and the online survey. |
Yitian Xiao | Student | Conceptualization, Investigation, Visualization, Writing |
He participated in the brainstorming of the modeling project; he used Simbiology to establish the reaction model and modify the parameters; he used Simbiology to visualize the reaction process; he wrote the content of "modeling" part for wiki. |
Ruijie Ding | Student | Investigation, Background Research, Writing, Safety |
She performed experiments including protein purification, Gibson assembly and Kirby-Bauer test; she read peer-reviewed scientific research articles to build initial experimental proposals and protocols; she wrote the content of "proof-of-concept" part for wiki; she participated in writing protocol of safety experiment. |
Yu Bai | Student | Conceptualization, Investigation, Visualizations, Writing, Background Research |
He participated in brainstorming before the initiation of experiments to determine the protocol and whole process. He also proposed a combing expression system of pra-pol and P450 engineering bacteria; for dry lab, he designed the comprehensive models and completed plasmid construction plans; for wet lab, he performed SDS-PAGE and spectrophotometry; he used Simbiology to visualize the reaction process; he integrated the data obtained in the comprehensive model, write for wiki "Modeling" part; he read scientific articles related to alpha-pinene oxide degradation and model construction. |
Di Wu | Student | Conceptualization, Background Research, Public Engagement, Writing, Investigation |
She participated in brainstorming and developing ideas for the project; she read peer-reviewed scientific research articles online about turpentine to help understand the background of the project; she learned the Wiki of previous iGEM teams to get insight into how the Human Practice work was conducted; she connected with a volunteering teaching team, participated in, and organized activities about synthetic biology; handed out questionnaires to different groups; she wrote the HP overview. Joined in the writing part of communication, education, and collaboration. Produce and edit tweets to advertise our teams; she collected the offline questionnaire. |
Mingyuan Wang | Student | Wiki Coding, Writing, Other |
He is one of the main programmer for the team wiki, mainly take charge of homepage, menu and member page; he wrote and modified some parts of the wiki; he supply bilibili account for official advertise. |
External Contributions | ||||
Name | Institution Type | Relationship To Team | Tasks | Specific Tasks |
---|---|---|---|---|
Asimov | Industry | Sponsor | Software | Provided a software that allows precise design, simulation, and visualization of plasmid assembly and cloning procedures for this project. |
IDT | Industry | Sponsor | Software | Provided a software that allows precise design and optimization of the primers. |
ChatGPT | Industry | Contractor | Writing | We used ChatGPT-3.5 for the initial draft of writing the "Chapter 5 Safety literacy" of Safety Handbook. The content was verified and re-write by the team. We also learned some of the code ideas from ChatGPT - 3.5. |
Sangon Biotech (Shanghai) Co.,Ltd | Industry | Contractor | Comceptualization, investigation |
(1) Conceptualization - Provided valuable suggestions for plasmid construction and insertion site selection of target genes; (2) Investigation - Provided whole gene synthesis, plasmid assembly and primer synthesis services to the team. |
BioRender | Industry | Contractor | Software | We used BioRender to create the work including workflow graphics and other schematic diagram on the wiki. |
Snapgene | Industry | Contractor | Software | Provided a software that allows precise design and optimization of the primers. |
Department of Chemistry, Zhejiang University | Academic | Collaborator | Investigation | Performed the GC-MS tests for this project. |
Yi Xiong | Academic | Collaborator | Project Administration | A PhD student in our university, provided us with a plasmid (PET-28a). |
Mengdi Jin | Academic | Collaborator | Project Administration | The core facility technician assists us in comunicating with the college and get help from the college. |
Quan Yang | Academic | External Advisor | Project Administration | A PhD student in our university, assisted in conducting electroporation. |
Wenguang Wang | Academic | External Advisor | Project Administration | A PhD student in our university, assisted in conducting electroporation. |
Di Chen | Academic | External Advisor | Project Administration | He is a professor of our institute who gave us some guidance on the wet experiment. |
Lisheng Kong | Academic | External Advisor | Wiki Coding | He helped solve some of the difficulties encountered in writing wikis |
Jinkun Xiao | Academic | External Advisor | Wiki Coding | He helped to write some wikis |
Xiangdong Art Museum (0799 Art Zone) | Government | Collaborator | Other | It provided services requested by the team including the human practice part and the product design. |
Xun He | Other | External Advisor | Other | He is an artists and provided us with suggestions on product form. |
Jianyi Geng | Other | External Advisor | Other | He is an artist and provided us with background information. |
Baiqiao Zhang | Other | External Advisor | Other | He is an artists and provided us with information about turpentine and oil painting. |
Jue Hu | Other | External Advisor | Other | He is an artist and provided us with suggestions for product positioning. |
Donghua Ouyang | Other | External Advisor | Other | She is an artists and provided us with information of turpentine. |
Xiangmin Zhu | Other | External Advisor | Other | He is an artist and provided us with background information. |
Oil paint stores | Other | External Advisor | Other | They provided some market information. |
International Campus Zhejiang University - Juxi Cangnan Wenzhou Summer Social Practice Group | Other | Collaborator | Public Engagement | It prepared a volunteer teaching activity to engage the broader community. |
"Haishishanmeng" Volunteering Teaching Team of Zhejiang University | Other | Collaborator | Public Engagement | It prepared a volunteer teaching activity to engage the broader community. |
Project Timeline | |||
Project Activity | Start Date | End Date | Total Time (weeks) |
1. Recruit Team Members |  2023/01/06 |
 2023/06/08 |
 22 |
2. Development of Project Plan |  2023/02/15 |
 2023/04/24 |
 10 |
3. Wet Laboratory Activities |  2023/08/06 |
 2023/10/10 |
 10 |
4. Dry Laboratory Activities |  2023/06/24 |
 2023/10/10 |
 15 |
5. Building the Team Wiki |  2023/06/20 |
 2023/10/12 |
 16 |