EXPERIMENTS

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Transformation of E. coli Using Heat Shock Method


  1. Mix DNA into competent cells in a microcentrifuge.
  2. Incubate the competent cell/DNA mixture on ice for 20-30 mins.
  3. Heat shock each transformation tube by placing the bottom 1/2 to 2/3 of the tube into a 42°C water bath for 30-60 secs
  4. Put the tubes back on ice for 2 min.
  5. Add 250-1,000 μl LB or SOC media (without antibiotic) to the bacteria and grow in 37°C shaking incubator for 45 min.
  6. Plate some or all of the transformation onto a LB agar plate containing the appropriate antibiotic.
  7. Incubate plates at 37°C overnight.

Verification of Transformation via Colony PCR


  1. Put sample of bacteria colony into thermal cycler along with necessary ingredients for PCR (dNTP, primers, buffer, Taq Polymerase) and heat to 95 C for 30 seconds.
  2. Use the thermal cycler to achieve the following temperatures for 30 cycles
  3. Use a sample of the PCR product to confirm length of the DNA insert via gel electrophoresis

Exposure of E. Coli to PCB-11


  1. Add 25 uL of PCB-11 to 250 uL of water and add this mixture to E. Coli plate.
  2. Place E. Coli plate in 30℃ incubator for 24 hours.

Measurement of PCB Products in Wastewater Using GCMS


  1. Add 10 uL of PCB water mixture from E. Coli plate to a centrifuge tube and spin down tube in centrifuge at 5,000 rpm for 10 min.
  2. Add 100 uL of cyclohexane to GCMS tube and add 1 uL of water from centrifuge tube.
  3. Measure PCB concentration using GCMS (Gas Chromatography Mass Spectrometry).