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Future

In the field of biology, the application of AI has become a prominent area of interest

LinearDesign algorithm developed by Baidu
It reduce the development time of mRNA vaccines

Problem

DATA is the foremost limiting factor for the application of AI in synthetic biology.

Data acquisition entails substantial investment of manpower, time, financial resources.

Solution

In order to bridge the daa gap,which represents the final frontier of AI in the field of biology.
NJU-China has innovatively employed the paradigm of

Transefer Learning: Pre-training + Fine-tuning

we focused on
the promoter sequences of eukaryotic expression systems
and train our model utilizing
a minimal amount of experimental data
To unconvered protential underlying mechanisms

Implementation

Address a critical issue in systhetic biology: Expression

LTB: an important oral vaccine adjuvant, has beem limited in its application and widespread adoption due to low expression levels.By optimizing the promoter sesuences to enhance its expression, we provide a cost-effective solution to the popularization of mucosal vaccine.

Pymaker further validates the practicality and scalability of the proposed learining paradigm and AI models in the field of synthetic biology

Higher Performance, Less Cost


Our model has much higher efficiency in

learning the working laws.

To achieve the same goodness of

fit (0.85 PCC):

requires1/10 data,

670,000 less sample size,

saves over $335,000,000

Small Sample Size Makes A Big Deal

Much stronger capability of uncover

promoter's inherent woking Laws.

with 3,000 samples:

other models only achieve a fit of 0.217,

which totally unusable.

while our model has an extraodinary fiting effect

of 0.701 of PCC,

proved to be a pure invention never been proposed.

Future Plan & Prospect

Longitudinal: Deeply enhancing model performance

Pymaker will generate a large amount of predictive data. After being measured through larger-scale and longer-term wet laboratory experiments, these data points can be fed back into our computational experiments to further improve the fitness of AI models.

Horizontal: Widely expanding model applications

Pymaker will transition from the laboratory to the factory. By developing software that uses deep learning to design yeast promoter elements with sequential interactions, it will generate promoter sequences that drive specific downstream gene expression intensities. This expansion of Pymaker's application scope will guide the design and optimization of yeast-related fermentation production lines.

shape

Sponsor&Collaborator

Promotion Video



See More Info Above

Useful Links

  • Home
  • Description
  • Engineering Success
  • Human Practice
  • Model
  • New Basic Part

Contact

Address: No.163 xianlin Avenue, Nanjing,
Jiangsu Province, China

Email: nju_china_igem@163.com

About

Nanjing University Official Website

Site Repository On GitLab

iGEM -2023 NJU - China


© 2023 - Content on this site is licensed under a Creative Commons Attribution 4.0 International license.

The repository used to create this website is available at gitlab.igem.org/2023/nju-china.

NJU-China iGEM Team All Rights Reserve.

Useful Links

  • Home
  • Description
  • Engineering Success
  • Human Practice
  • Model
  • New Basic Part

Contact

Address: No.163 xianlin Avenue, Nanjing,
Jiangsu Province, China

Email: nju_china_igem@163.com

About

Nanjing University Official Website

Site Repository On GitLab

iGEM -2023 NJU - China


© 2023 - Content on this site is licensed under a Creative Commons Attribution 4.0 International license.

The repository used to create this website is available at gitlab.igem.org/2023/nju-china.

NJU-China iGEM Team All Rights Reserve.